mtDNAtool: the mtDNA Analysis Utility

"); rdffile.flush(); rdffile.close(); } if(document.options.makeCSV.checked) { var csvfile = new buffer(window.open("","_blank","height=600,width=800,titlebar=1,menubar=1,scrollbars=1,resizable=1")); csvfile.write("

dna.csv"); DisplayCSV(csvfile,document.options.transposeCSV.checked); csvfile.write("

"); csvfile.flush(); csvfile.close(); } if(document.options.showSummary.checked||document.options.computeDistance.checked) { outfile = new buffer(window.open("","_blank", "height=600,width=800,titlebar=1,menubar=1,scrollbars=1,resizable=1,toolbar=0")); outfile.write("

mtDNA Analysis Results"); //outfile.write(""); outfile.write(""); if(document.options.showSummary.checked) { outfile.writeln("\r\n<"+"!--Begin Summary Table-"+"->"); threshold=(document.options.collapseHVRs.checked&&document.options.sortHVR.checked)?1:0; DisplayBriefSummary(outfile,threshold); outfile.writeln("\r\n<"+"!--End Summary Table-"+"->"); } if(document.options.computeDistance.checked) { outfile.writeln("\r\n<"+"!--Begin Distance Table-"+"->"); ComputeDistanceHeader(outfile); ComputeDistance(outfile); ComputeDistanceFooter(outfile); outfile.writeln("<"+"!--End Distance Table-"+"->"); } outfile.writeln("\r\n"+"

Created with mtDNAtool version "+version+"."); outfile.writeln("

"); outfile.flush(); outfile.close(); } // Clean up delete HVR1; delete HVR2; delete CR delete HG; delete ignore; delete Records; now = new Date(); writestatus("Done "+(now.getTime()-tStart)/1000.0+"seconds"); } // // Debug Functions // function writedebug(string) { if(debug) { if(document.debugform.debug.checked) { document.debugform.debugbox.value+=string+"\r\n"; } } } function Dump(obj) { if(debug) { var temp = ""; for (x in obj) temp += x + ": " + obj[x] + "\n"; alert ("Dump:"+temp+"$"); } } function Barf(string) { if(confirm("Abort? "+string)) xyzzy(); } // // Buffer Class Implementation // function buffer(Stream) { if(Stream==undefined) alert("Unable to open output windows. Make sure to allow pop-ups on this site."); this.stream = Stream; // Attach buffer to stream this.out = ""; // Reset buffer this.write = function(string) { // writeln Method if(this.stream==undefined) return; this.out += string; if(this.out.length>1000) // don't let buffer get too big. this.flush(); } this.writeln = function(string) { // write Method if(this.stream==undefined) return; this.out += string; this.stream.document.writeln(this.out); this.out = ""; } this.flush = function() { // flush Method if(this.stream==undefined) return; this.stream.document.write(this.out); this.out = ""; // fresh buffer } this.close = function () { // close Method if(this.stream==undefined) return; if(this.out.length>0) this.flush(); this.stream.document.close(); } } // // Marker Class Implementation // function marker(Name) { var uname=Name.toUpperCase(); // Parameters this.markerType = undefined; this.markerFreq = 1; this.markerPct = 0; this.markerIgnore = 0; if((uname.charAt(0)=='A')||(uname.charAt(0)=='C')||(uname.charAt(0)=='G')||(uname.charAt(0)=='T')) { uname = uname.slice(1); } this.markerBp=parseInt(uname.replace(/[A-Z]/g,""),10); if(isNaN(this.markerBp)) { Barf("NaN: ^"+Name+"$ -> ^"+uname+"$ -> ^"+uname.replace(/[A-Z]/g,"")+"$"); } if(uname.indexOf("-")!=-1) { //Deletion this.markerMutation="-" } else if(uname.indexOf(".")!=-1) { //Insertion var dot = uname.indexOf("."); if(document.options.collapseInsertions.checked) { this.markerMutation="+"; } else { this.markerMutation=uname.substr(uname.indexOf(".")); } } else if(uname.indexOf("A")!=-1) { this.markerMutation="A"; } else if(uname.indexOf("C")!=-1) { this.markerMutation="C"; } else if(uname.indexOf("G")!=-1) { this.markerMutation="G"; } else if(uname.indexOf("T")!=-1) { this.markerMutation="T"; } else if(uname.indexOf("?")!=-1) { this.markerMutation="?"; } else { this.markerMutation="!"; //writedebug("Unidentified Marker: "+Name); } this.markerName = uname; this.markerType = "CR"; if(this.markerBp<600) this.markerType="HVR2"; if(this.markerBp>16000) this.markerType="HVR1"; // Methods this.GetName = function() { return this.markerName; } this.GetFullName = function() { var name = ""; if(this.markerType==undefined) name = this.markerName; if((this.markerType=="HVR1")&&(this.markerBp<16000)) { name = (16000+this.markerBp)+this.markerMutation; } else { name = this.markerBp+this.markerMutation; } return name; } this.GetRDFName = function() { var name = this.GetFullName(); if (name.length>6) name = this.GetTranslateName(); while (name.length<4) name = "0"+name; return name; } this.GetTranslateName = function () { var name = ""; var mutation = "string"; mutation = this.markerMutation; switch (mutation) { //Translate Insertions - Any standards for this? case ".1A": mutation="a"; break; case ".2A": mutation="b"; break; case ".3A": mutation="c"; break; case ".4A": mutation="d"; break; case ".5A": mutation="e"; break; case ".1C": mutation="f"; break; case ".2C": mutation="g"; break; case ".3C": mutation="h"; break; case ".4C": mutation="i"; break; case ".5C": mutation="j"; break; case ".1G": mutation="k"; break; case ".2G": mutation="l"; break; case ".3G": mutation="m"; break; case ".4G": mutation="n"; break; case ".5G": mutation="o"; break; case ".1T": mutation="p"; break; case ".2T": mutation="q"; break; case ".3T": mutation="r"; break; case ".4T": mutation="s"; break; case ".5T": mutation="t"; break; } if(this.markerType==undefined) name = this.markerName; if(this.markerType=="HVR1") { var bp = parseInt(this.markerBp); if(bp<16000) name = (16000+bp)+mutation; else name = bp+mutation; } else { var bp = parseInt(this.markerBp); name = bp+mutation; } writedebug(this.markerMutation + " " + mutation + " " + name); return name; } this.onList = function(MarkerArray) { for(var i = 0; iMAXLEN) { if(!confirm(".rdf file linelength exceeds "+MAXLEN+ ".\r\nIf you proceed, the data will be truncated.")) return; trimcount = 2; } if(document.options.trimUnique.checked) trimcount = 2; rdffile.writeln("

");	// Use PreFormatted Text tag, Spaces are critical
	for(var i=0;iMAXLEN) continue;
			if(HVR1[j].markerFreqMAXLEN) continue;
				if(HVR2[j].markerFreqMAXLEN) continue;
				if(CR[j].markerFreqNAMELEN) 
			label = label.slice(0,NAMELEN);
		for(var j=0;jMAXLEN) continue;
				if(HVR1[j].markerFreqMAXLEN) break;
					if(HVR2[j].markerFreqMAXLEN) break;
					switch(Records[i].CRMatches[j]) {
						case 0: rdffile.write("0"); break;
						case 1: rdffile.write("1"); break;
						case -1: rdffile.write("N"); break;
					}
				}
			}
		} else {
			for(var j=0;jMAXLEN) break;
				if(HVR1[j].markerFreqMAXLEN) break;
					switch(Records[i].HVR2Matches[j]) {
						case 0: rdffile.write(rCRS.charAt(HVR2[j].markerBp-1)); break;
						case 1: rdffile.write(HVR2[j].markerMutation.charAt(0)); break;
						case -1: rdffile.write("N"); break;
					}
				}
				for(var j=0;jMAXLEN) break;
					switch(Records[i].CRMatches[j]) {
						case 0: rdffile.write(rCRS.charAt(CR[j].markerBp-1)); break;
						case 1: rdffile.write(CR[j].markerMutation.charAt(0)); break;
						case -1: rdffile.write("N"); break;
					}
				}
			}
		}
		rdffile.writeln("  1");		//Record Weight
	}
	rdffile.writeln("");
	linelen=0;
	for(var j=0;jMAXLEN) break;
		rdffile.write("10");			//Mutation Weight
	}
	if(document.options.includeHVR2.checked) {	
		for(var j=0;j");	
	writestatus("Constructing RDF Matrix...Done");
}

//
// Display Summary
//
function DisplayCSV(outfile,transpose) {
	if(transpose) {
		outfile.write("")
		var p = 0;		
		var pl = (Records.length+HG.length+HVR1.length+CR.length+HVR2.length);
		for(var i = 0; i")
	} else {
		outfile.write("")
		for(var i = 0; i");
	outfile.write(""+title+"");
	outfile.write("");
	outfile.write("");
	if(BriefHVR1.length>0)
		outfile.write("HVR1");
	if(BriefHVR2.length>0)
		outfile.write("HVR2");
	if(BriefCR.length>0)
		outfile.write("CR");
	outfile.write("");
	outfile.write("");
	outfile.write("Markers");
	for(var i=0;i50)&&document.options.showModal.checked) {		
			outfile.write("");
		} else {
			outfile.write("");
		}
		if(document.options.showFullName.checked) {
			label = BriefHVR1[i].GetFullName();
		} else {
			label = BriefHVR1[i].GetName();
		}
		if(BriefHVR1[i].markerIgnore) label+="*";
		if(document.options.fmtNarrow.checked) {
			writeVert(label);
		} else {
			outfile.write(label);
		}
	}
	if(BriefHVR1.length>0) {
		outfile.write("");
		if(threshold>0)
			outfile.write("Unique
Mutations
(+16000)");
	}
	var HVR2count = 0;
	for(var i=0;i50)&&document.options.showModal.checked) {		
			outfile.write("");
		} else {
			outfile.write("");
		}
		//var label;
		if(document.options.showFullName.checked)
			label = BriefHVR2[i].GetFullName();
		else
			label = BriefHVR2[i].GetName();
		if(BriefHVR2[i].markerIgnore) label+="*";
		if(document.options.fmtNarrow.checked) {
			writeVert(label);
		} else {
			outfile.write(label);
		}
	}
	if(BriefHVR2.length>0) {
		outfile.write("");
		if(threshold>0)
			outfile.write("Unique
Mutations
");
	}
	var CRcount = 0;
	for(var i=0;i50)&&document.options.showModal.checked) {		
			outfile.write("");
		} else {
			outfile.write("");
		}
		//var label;
		if(document.options.showFullName.checked)
			label = BriefCR[i].GetFullName();
		else
			label = BriefCR[i].GetName();
		if(BriefCR[i].markerIgnore) label+="*";
		if(document.options.fmtNarrow.checked) {
			writeVert(label);
		} else {
			outfile.write(label);
		}
	}
	if(BriefCR.length>0) {
		outfile.write("");
		if(threshold>0)
			outfile.write("Unique
Mutations");
	}
	outfile.write("");
	
	//
	// Output HVR Frequency
	//
	outfile.write("");
	if(document.options.showHVRpct.checked) {
		outfile.write("Freq(%)
Count");
		for(var i=0;i"+BriefHVR1[i].markerPct.toFixed(1));
			outfile.write("
"+BriefHVR1[i].markerFreq+"");
		}
		if(BriefHVR1.length>0) {
			if(threshold>0) {		
	 			outfile.write(""+eval(100*threshold/Records.length).toFixed(1));
				outfile.write("
"+threshold+"");
			} else {
	 			outfile.write("");
			}
		}
		for(var i=0;i"+BriefHVR2[i].markerPct.toFixed(1));
			outfile.write("
"+BriefHVR2[i].markerFreq+"");
		}
		if(BriefHVR2.length>0) {
			if(threshold>0) {		
	 			outfile.write(""+eval(100*threshold/HVR2count).toFixed(1));
				outfile.write("
"+threshold+"");
			} else {
	 			outfile.write("");
			}
		}
		for(var i=0;i"+BriefCR[i].markerPct.toFixed(1));
			outfile.write("
"+BriefCR[i].markerFreq+"");
		}
		if(BriefCR.length>0) {
			if(threshold>0) {		
	 			outfile.write(""+eval(100*threshold/CRcount).toFixed(1));
				outfile.write("
"+threshold+"");
			} else {
	 			outfile.write("");
			}
		}
		outfile.write("");
	}
	outfile.write("IDHG");
	for(var i=0;i"+Records[i].Name);
		if(document.options.ignoreNoHVR2.checked) {
			if(!Records[i].HVR2tested) {		//Mark Records that will be ignored
					outfile.write("*");
			}
		}
		if(Records[i].HG!=undefined) {
			outfile.write(""+Records[i].HG);
		}
		else
			outfile.write("");
		for(var k=0;k"+" "); break;
				case 1: outfile.write(""+"+"); break;
				default: outfile.write(""+"N"); break;
			}
		}
		var label = "";
		for(;k0)
					label += ",
";
				label += HVR1[k].markerName;
			}
		}
		if(BriefHVR1.length>0)
			outfile.write(""+label);

		for(var k=0;k"+" "); break;
				case 1: outfile.write(""+"+"); break;
				default: outfile.write(""+"N"); break;
			}
		}
		var label = "";
		for(;k0)
					label += ",
";
				label += HVR2[k].markerName;
			}
		}
		if(BriefHVR2.length>0)
			outfile.write(""+label);

		for(var k=0;k"+" "); break;
				case 1: outfile.write(""+"+"); break;
				default: outfile.write(""+"N"); break;
			}
		}
		var label = "";
		for(;k0)
					label += ",
";
				label += CR[k].markerName;
			}
		}
		if(BriefCR.length>0)
			outfile.write(""+label);

		outfile.write("");
	}
	if(Records[0]!=undefined) {
		span = 2;
		if(BriefHVR1.length>0) span += BriefHVR1.length+1;
		if(BriefHVR2.length>0) span += BriefHVR2.length+1;
		if(BriefCR.length>0) span += BriefCR.length+1;
		outfile.write("");
		if(document.options.showModal.checked)
			outfile.write("Notes:Red Markers indicate >50% of samples tested were positive for marker");
		if(document.options.ignoreNoHVR2.checked)
			outfile.write("
* Data Entries are omitted in Genetic Distance Calculations (No HVR2 Data)");
		outfile.write("
* Markers are ignored in Genetic Distance Calculations");
		if(document.options.collapseInsertions.checked)
			outfile.write("
Multiple insertions at a bp are collapsed to single mutation for comparisons")
		outfile.write("
+ in column indicates the samples tested positive for marker");
		outfile.write("
blank in column indicates the samples tested negative for marker");
		outfile.write("
N in column indicates the samples were not tested for marker and omitted from frequency calculations");
		outfile.write("
HG in Bold are not estimated");
		outfile.write("");
		if(document.options.translateHVR.checked) {		
			outfile.write("Insertion Abbreviations used:");
			outfile.write(".1A -> a; .2A -> b; .3A -> c .4A -> d .5A -> e");
			outfile.write("       
.1C -> f; .2C -> g; .3C -> h .4C -> i .5C -> j");
			outfile.write("       
.1G -> k; .2G -> l; .3G -> m .4G -> n .5G -> o");
			outfile.write("       
.1T -> p; .2T -> q; .3T -> r .4T -> s .5T -> t");
			outfile.write("       
Other Mutations -> ?");
		}
	}
	outfile.write("");
}

function CalculateDistance(rowI,rowJ) {
	var now = new Date(); tFunc = now.getTime();
	var dist = 0;
	for(var k=0;k");
	return dist;
}

function sortByName(a,b) {
	var result = 0.0;
	if(a.Name > b.Name) result = 0.5;
	else if(a.Name < b.Name) result = -0.5;
	return result;
}

function sortByHaplogroup(a,b) {
	var a1 = a.HG;
	var b1 = b.HG;
	a1=a1.replace("","");
	a1=a1.replace("","");
	b1=b1.replace("","");
	b1=b1.replace("","");
	a1=a1.replace("","");
	a1=a1.replace("","");
	b1=b1.replace("","");
	b1=b1.replace("","");
	//writedebug(a1+" "+b1);
	var result = 0;
	if(a1 > b1) result = 1;
	else if(a1 < b1) result = -1;
	else result = sortByName(a,b);
	return result;
}

function EstimateHG(HG,HVR1,HVR2) {
	var estHG = "unknown";
	var strHVR1 = "";
	for(var i = 0; i"+HG+"";
	if(estHG.indexOf("X1")!=-1) return ""+HG+"";
	if(estHG.indexOf("X")!=-1) {
		estHG = "X*";
		if(strHVR1.indexOf("104")!=-1) estHG = "X1a";
		if(strHVR2.indexOf("146")!=-1) {
			estHG="X1*";
			if(strHVR1.indexOf("104")!=-1) estHG = "X1a";
			if(strHVR2.indexOf("256")!=-1) estHG = "X1b";
		}
		if(strHVR1.indexOf("213")!=-1) estHG = "X2a";
		if(strHVR2.indexOf("195")!=-1) {
			estHG="X2*"
			if(strHVR1.indexOf("213")!=-1) estHG = "X2a";
			if(strHVR2.indexOf("200")!=-1) estHG = "X2a";
			if(strHVR2.indexOf("226")!=-1) estHG = "X2b";
		}
		if(strHVR1.indexOf("255")!=-1) estHG = "X2c";
		if(strHVR2.indexOf("257")!=-1) estHG = "X2f";
	} else {
		if(estHG.indexOf("unknown")==-1) return ""+HG+"";
	}
	return estHG;
}

function ComputeDistanceHeader(Outfile) {
	var title = document.options.DistanceTitle.value;
	outfile.write("

");	// Create Genetic Distance Table
	outfile.write("");

	outfile.write("");
	outfile.write("");
	outfile.write("");
}

function ComputeDistance(outfile) {
	var now = new Date(); tFunc = now.getTime();
	for(var i=0;i");
	}
	outfile.write(""+title+"");
	if(ignore[0]!="")
		outfile.write("
markers "+document.options.ignore.value+" ignored");
	outfile.write("Name HG");
	for(var i=0;i");
		if(document.options.fmtNarrow.checked) {
			writeVert(Records[i].Name);
		} else {
			outfile.write(Records[i].Name);
		}
	}
	outfile.write("
"+Records[i].Name+" "+Records[i].HG);
		for(var j=0;j"); break;
				case 1: outfile.write(" "); break;
				case 2: outfile.write(" "); break;
				case 3: outfile.write(" "); break;
				default: outfile.write(" "); break;
			}
			outfile.write(dist);
		}
		outfile.write("");
}

function ComputeDistanceFooter(outfile) {	
	outfile.write("");   // Create the Legend
	outfile.write("");
	outfile.write("");
	outfile.write(" Genetic Distance ");
	outfile.write("  0 ");
	outfile.write("  1 ");
	outfile.write("  2 ");
	outfile.write("  3 ");
	outfile.write("  > 3");
	outfile.write("");
	outfile.write("A lower number in a column indicates a closer match");
}	

function writeVert(str) {
	if(str.length>0) {
		for(var j = 0; j");
		}
	} else {
		outfile.write("
");
	}
}

function FillDemo() {
	if(document.options.dataformat[0].checked)
		document.options.input.value=demoFTDNA;
	if(document.options.dataformat[1].checked)
		document.options.input.value=demoMitoSearch;
	if(document.options.dataformat[2].checked)
		document.options.input.value=demoFullSequence;
}

var demoFTDNA = "# Kit/Name Haplo HVR1 HVR2 \n"+
"1 AModal A 111T,223T,290T,319A,362C 64T,73G,146C,235G,263G,522-,523- \n"+
"2 BModal B 189C,183C,217C,519C 73G,263G,309.1C,315.1C,499A \n"+
"3 CModal C 223T,298C,325C,327T 73G,249-,249-,263G,290-,291-,315.1C,498C,523- \n"+
"4 DModal D 223T,325C,362C 73G,263G,315.1C,489C \n"+
"5 FModal F 304C,519C 73G,263G,315.1C,522-,423- \n"+
"6 HModal H CRS\n"+
"7 IModal I 129A,223T,391A,519C 73G,199C,204C,250C,263G,315.1C \n"+
"8 JModal J 69T,126C 73G,263G,259T,295T,315.1C,489C,462T,185A,228A \n"+
"9 KModal K 224C,519C,311C 73G,263G,315.1C,146C\n"+
"10 LModal L 223T 73G,263G\n"+
"11 MModal M 223T,519C 73G,263G,315.1C,489C\n"+
"12 NModal N 223T,519C 73G,263G,195C,204C,207A,189G \n"+
"13 RModal R 519C 73G,263G,315.1C,309.1C\n"+
"14 TModal T 294T,519C,126C,296T 73G,263G,315.1C\n"+
"15 UModal U CRS 73G,263G,315.1C\n"+
"16 VModal U 298C 72C,263G,309.1C,315.1C\n"+
"17 WModal W 223T,519C,292T 73G,263G,315.1C,204C,207A,189G,195C,309.1C,194T \n"+
"18 Xenia X 183C,189C,278T 73G,225A,226C,263G,315.1C \n"+
"19 X1*Modal X 183C,189C,519C 73G,146C,225A,226C,263G,315.1C \n"+
"20 X1aModal X 104T,183C,189C,519C 73G,146C,225A,263G \n"+
"21 X1bModal X 183C,189C,223T,278T,519C 73G,146C,225A,226C,263G \n"+
"22 X2*Modal X 189C,223T,278T,519C 73G,153G,195C,225A,226C,263G \n"+
"23 X2aModal X 189C,213A,223T,278T,519C 73G,195C,200G,225A,226C,263G \n"+
"24 X2bModal X 189C,223T,278T,519C 73G,153G,195C,225A,226C,263G \n"+
"25 X2cModal X 189C,223T,255A,278T,519C 73G,195C,225A,226C,263G \n"+
"26 X2dModal X 189C,223T,278T,519C 73G,153G,195C,226C,263G \n"+
"27 X2eModal X 189C,223T,278T,519C 73G,153G,195C,226C,263G \n"+
"28 X2fModal X 189C,223T,278T,519C 73G,195C,226C,257G,263G \n";

var demoMitoSearch = "User ID HVR1 Mutations HVR2 Mutations \n"+
"27RHW 129A, 183C, 189C, 223T, 278T, 519C 073G, 153G, 195C, 225A, 226C, 263G, 309.1C, 315.1C \n"+
"2dyjm 183C, 189C, 223T, 278T, 519C 073G, 153G, 195C, 225A, 263G, 315.1C \n"+
"2G7FA 189C, 223T, 278T, 519C Not Tested \n"+
"2KUKF 145A, 189C, 223T, 278T, 301T, 519C Not Tested \n"+
"2VNCY 126C, 189A, 223T, 278T, 311C, 362C, 519C Not Tested \n"+
"2ZEHQ 093C, 108T, 183C, 189C, 223T, 255C, 278T, 519C Not Tested \n"+
"387RK 183C, 189C, 223T, 278T, 519C Not Tested \n"+
"3BZ6N 183C, 189C, 223T, 260T, 278T, 519C Not Tested \n"+
"3HJX9 108T, 183C, 189C, 223T, 255A, 278T, 519C 073G, 153G, 195C, 225A, 227G, 263G, 309.1C, 315.1C \n"+
"3JQU6 183C, 189C, 223T, 278T, 519C Not Tested \n"+
"3T7N2 182C, 183C, 189C, 223T, 248T, 278T, 519C 073G, 153G, 195C, 225A, 263G, 309.1C, 315.1C \n"+
"45JDG 189C, 223T, 278T, 519C Not Tested \n"+
"4DV3E CRS Not Tested \n"+
"4M4Y2 172C, 189C, 192T, 223T, 278T, 519C Not Tested \n"+
"579UC 189C, 223T, 278T, 519C 073G, 153G, 188G, 195C, 225A, 226C, 263G, 309.1C, 315.1C \n"+
"5FJK5 CRS Not Tested \n"+
"5NH4C 189C, 223T, 278T, 519C Not Tested \n"+
"5V8TT 171G, 183C, 189C, 223T, 278T, 519C Not Tested \n"+
"62VEB CRS No Mutations \n";

var demoFullSequence = 
"AF381986(Morocco) Maca-Meyer	X2b	A73G	A153G	T195C	G225A	A227G	A263G	315.1C	C522-	A523-	A750G	A1438G	G1719A	A2706G	A4722G	A4769G	T6221C	C6371T	C7028T	C7400A	C8393T	A8860G	G11719A	A11908G	C12705T	G13708A	T14470C	C14766T	A15326G	G15927A	G16129A	T16189C	C16223T	C16278T	T16519C\n"+
"AY195773.1(Finland) Mishmar 	X2c	A73G	A153G	T195C	G225A	A227G	A263G	315.1C	A750G	A1438G	G1719A	A2706G	C2834T	A4769G	T6221C	C6371T	C7028T	T8705C	A8860G	G11719A	C12705T	A13966G	T14470C	C14766T	A15326G	A16182-	A16183-	T16189C	16193.1C	16193.2C	C16223T	G16255A	C16278T	T16519C\n"+
"AY195787.1(Navajo) Mishmar 	X2a2	A73G	A153G	T195C	A200G	G225A	A263G	309.1C	315.1C	T400G	A750G	G1415A	A1438G	G1719A	A2706G	A4769G	T6221C	C6371T	C7028T	A8860G	A8913G	T10256C	C10659T	G11719A	A12397G	C12705T	A13966G	T14470C	T14502C	G14560A	C14766T	A15326G	A16183-	T16189C	16193.1C	G16213A	C16223T	A16254C	C16278T	T16519C\n"+
"AY339510.2(Finland) Moilanen 	X2c	A73G	A153G	T195C	G225A	A227G	A263G	315.1C	A750G	A1438G	G1719A	A2706G	A4769G	T6221C	C6371T	C7028T	T8705C	A8860G	G11719A	G12613A	C12705T	A13966G	T14470C	C14766T	A15326G	A16183-	T16189C	16193.1C	C16223T	G16255A	C16278T	16460.1C	T16519C\n"+
"AY339511.2(Finland) Moilanen 	X2c	A73G	T195C	G225A	A263G	A750G	A1438G	G1719A	A2706G	A4769G	T6221C	C6371T	C7028T	T8705C	A8860G	G11719A	G12613A	C12705T	A13966G	T14470C	C14766T	A15326G	C16108T	A16183-	T16189C	16193.1C	C16223T	G16255A	C16278T	T16519C\n"+		
"AY339512.2(Finland) Moilanen 	X2c	A73G	T195C	G225A	A263G	A750G	A1438G	G1719A	A2706G	A4769G	T6221C	C6371T	C7028T	T8705C	A8860G	G11719A	G12613A	C12705T	A13966G	T14470C	C14766T	A15326G	C16108T	A16183-	T16189C	16193.1C	C16223T	G16255A	C16278T	T16519C\n"+
"AY339513.2(Finland) Moilanen 	X2c	A73G	A153G	T195C	G225A	T226C	A263G	309.1C	309.2C	315.1C	G329A	A750G	A1438G	G1719A	A2706G	A4769G	T6221C	C6371T	C7028T	C8393T	T8705C	A8860G	C9830T	G11719A	G12613A	C12705T	G13708A	A13966G	T14470C	C14766T	A15326G	G15927A	A16183-	T16189C	16193.1C	C16223T	C16278T	T16519C\n"
"DQ112798.2(Europe) Kivisild 	X2e	G499A	A750G	A1438G	G1719A	A2706G	A4769G	T6221C	G6267A	C6371T	C7028T	A8860G	G11719A	C11932T	C12705T	G13135A	A13966G	T14470C	C14766T	A15034G	T15310C	A15326G	G15894A\n"+
"DQ112870.2(America) Kivisild 	X2b	C502T	A750G	A1438G	G1719A	A2706G	A4769G	T6221C	C6371T	C7028T	G8269A	C8393T	A8860G	G11719A	C12705T	G13708A	A13966G	T14470C	C14766T	A14818C	A15326G	G15927A";


CRS1 = 	"ATTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCAGATTTGGGT"+
		"ACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACA"+
		"TTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCAC"+
		"CTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTA"+
		"CAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTC"+
		"CAAAGCCACCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAA"+
		"CAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAA"+
		"ATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGAC"+
		"CACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCG"+
		"CTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACAT"+
		"CTGGTTCCTACTTCAGGGTCATAAAGCCTAAATAGCCCACACGTTCCCCT"+
		"TAAATAAGACATCACGATG";
        
CRS2 =	"GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCAT"+
		"TTGGTATTTTCGTCTGGGGGGTATGCACGCGATAGCATTGCGAGACGCTG"+
	  	"GAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATC"+
		"CTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTA"+
		"AAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAAT"+
		"GTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCA"+
		"AACCCCCCCTCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCA"+
		"AACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTT"+
		"TATCTTTTGGCGGTATGCACTTTTAACAGTCACCCCCCAACTAACACATT"+
		"ATTTTCCCCTCCCACTCCCATACTACTAATCTCATCAATACAACCCCCGC"+
		"CCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCA"+
		"ACCAAACCCCAAAGACACCCCCCA";        


rCRS=	"GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGG"+
	"GTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTC"+
	"CTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTA"+
	"ATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATC"+
	"ATAACAAAAAATTTCCACCAAACCCCCCCTCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCA"+
	"AACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCAC"+
	"TTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATCAATA"+
	"CAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCAACCAAACCCC"+
	"AAAGACACCCCCCACAGTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTC"+
	"ACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAA"+
	"GCATCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGAACAAGCATCAAGCACGCAGC"+
	"AATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATAA"+
	"ACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGA"+
	"TTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACT"+
	"CACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACAC"+
	"ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATC"+
	"AACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATC"+
	"CCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATA"+
	"CCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTC"+
	"AAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAACTACGATAGCCCTTAT"+
	"GAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGA"+
	"AGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCA"+
	"TTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACGAACCAGAGTGTA"+
	"GCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCTGAGCTAAACCTA"+
	"GCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCG"+
	"ATAGAAATTGAAACCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATA"+
	"ATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCC"+
	"AAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCA"+
	"AAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGAT"+
	"AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTC"+
	"CAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAG"+
	"TAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCAACACCCACTACCTAAAAAATCCCAAAC"+
	"ATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAG"+
	"TAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCC"+
	"AATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGA"+
	"AAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGC"+
	"ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAA"+
	"AGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCT"+
	"TACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCAAGACGAGAAGACCCTA"+
	"TGGAGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATT"+
	"AAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACCAG"+
	"TCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAACA"+
	"GCGCAATCCTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCG"+
	"ATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGG"+
	"AGTAATCCAGGTCGGTTTCTATCTACNTTCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCCT"+
	"ACTTCACAAAGCGCCTTCCCCCGTAAATGATATCATCTCAACTTAGTATTATACCCACACCCACCCAAGA"+
	"ACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAAT"+
	"TCCTCTTCTTAACAACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCA"+
	"TTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCC"+
	"CCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCAC"+
	"ATCTACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCC"+
	"CTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAG"+
	"CCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGC"+
	"AGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGC"+
	"TCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGG"+
	"CCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTC"+
	"CGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATAC"+
	"ACAAACATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATATGACGCACTCTCCC"+
	"CTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAAC"+
	"AGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTA"+
	"GCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAAGAAATAT"+
	"GTCTGATAAAAGAGTTACTTTGATAGAGTAAATAATAGGAGCTTAAACCCCCTTATTTCTAGGACTATGA"+
	"GAATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTATCACACCCCATCCTAAAGTAAGGTC"+
	"AGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTCCCGTACTAATTAATCCCCT"+
	"GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTT"+
	"TTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTC"+
	"GTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTAT"+
	"CCTCTTCAACAATATACTCTCCGGACAATGAACCATAACCAATACTACCAATCAATACTCATCATTAATA"+
	"ATCATAATAGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAG"+
	"GCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCA"+
	"AATCTCTCCCTCACTAAACGTAAGCCTTCTCCTCACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGA"+
	"GGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAA"+
	"TAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTAC"+
	"CGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTA"+
	"ACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTT"+
	"TGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCAC"+
	"CATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATA"+
	"TCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCG"+
	"CCCTTACCACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTATAGAAATTTAGGTTAAATAC"+
	"AGACCAAGAGCCTTCAAAGCCCTCAGTAAGTTGCAATACTTAATTTCTGTAACAGCTAAGGACTGCAAAA"+
	"CCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGA"+
	"CTTAAACCCACAAACACTTAGTTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACTTCTCCCGCC"+
	"GCCGGGAAAAAAGGCGGGAGAAGCCCCGGCAGGTTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATGA"+
	"AAATCACCTCGGAGCTGGTAAAAAGAGGCCTAACCCCTGTCTTTAGATTTACAGTCCAATGCTTCACTCA"+
	"GCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGG"+
	"AACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCC"+
	"GAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCAT"+
	"TTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAAT"+
	"AATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTC"+
	"CTACTCCTGCTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAG"+
	"CAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTC"+
	"CTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATAC"+
	"CAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAG"+
	"CTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGG"+
	"AGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCA"+
	"GGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTA"+
	"TGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGG"+
	"AATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAA"+
	"GTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAG"+
	"GATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGACATCGT"+
	"ACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATC"+
	"ATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCC"+
	"ATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAAT"+
	"GCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTC"+
	"ATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCC"+
	"TAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGA"+
	"AGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAA"+
	"CCCCATGGCCTCCATGACTTTTTCAAAAAGGTATTAGAAAAACCATTTCATAACTTTGTCAAAGTTAAAT"+
	"TATAGGCTAAATCCTATATATCTTAATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCT"+
	"ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCC"+
	"TGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGA"+
	"AACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTAC"+
	"ATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACG"+
	"AGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGA"+
	"CCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACA"+
	"TCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTC"+
	"TAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGC"+
	"AAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTT"+
	"ACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTT"+
	"AAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCCACCAT"+
	"AATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTA"+
	"CCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCT"+
	"GTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCT"+
	"CTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAAC"+
	"TAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTT"+
	"AATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTA"+
	"TCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCACAGTGATTATAGGCTTTCGCTCTAAGATTA"+
	"AAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGA"+
	"AACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCAC"+
	"CTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCA"+
	"TCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCAC"+
	"ACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCACATGCCTATCATATAGTAA"+
	"AACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATT"+
	"TCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGG"+
	"CGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCACCTGTCCAAAAAGGCCTTCGATACG"+
	"GGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTACCACTCCAG"+
	"CCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAA"+
	"GTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAA"+
	"TAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCT"+
	"CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTT"+
	"GTAGCCACAGGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCC"+
	"AACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGT"+
	"AGATGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTTAGTATAAATAGT"+
	"ACCGTTAACTTCCAATTAACTAGTTTTGACAACATTCAAAAAAGAGTAATAAACTTCGCCTTAATTTTAA"+
	"TAATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGGCTACAT"+
	"AGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAA"+
	"TTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCCCTACCATGAG"+
	"CCCTACAAACAACTAACCTGCCACTAATAGTTATGTCATCCCTCTTATTAATCATCATCCTAGCCCTAAG"+
	"TCTGGCCTATGAGTGACTACAAAAAGGATTAGACTGAACCGAATTGGTATATAGTTTAAACAAAACGAAT"+
	"GATTTCGACTCATTAAATTATGATAATCATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAG"+
	"CATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGA"+
	"AGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAAT"+
	"ATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAA"+
	"TCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCA"+
	"ACAATTATATTACTACCACTGACATGACTTTCCAAAAAACACATAATTTGAATCAACACAACCACCCACA"+
	"GCCTAATTATTAGCATCATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCC"+
	"AACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATC"+
	"ATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCT"+
	"CCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAAC"+
	"CACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACA"+
	"TACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCC"+
	"TAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTT"+
	"AATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCT"+
	"AAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCT"+
	"ATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACT"+
	"ATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCA"+
	"TACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACCCCCTGAAGCTTCACCG"+
	"GCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTA"+
	"CGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTT"+
	"TGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTG"+
	"TGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGC"+
	"CCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAA"+
	"CCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCCTCAACC"+
	"CCGACATCATTACCGGGTTTTCCTCTTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAA"+
	"CAGAGGCTTACGACCCCTTATTTACCGAGAAAGCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAAC"+
	"AACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCCCAAAAATTTTGGTGCA"+
	"ACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCC"+
	"ATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATACCCCCATTATGTAAAATCCATTGTCGCAT"+
	"CCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAA"+
	"CTGACACTGAGCCACAACCCAAACAACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATA"+
	"TTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACC"+
	"CAAACATTAATCAGTTCTTCAAATATCTACTCATCTTCCTAATTACCATACTAATCTTAGTTACCGCTAA"+
	"CAACCTATTCCAACTGTTCATCGGCTGAGAGGGCGTAGGAATTATATCCTTCTTGCTCATCAGTTGATGA"+
	"TACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTT"+
	"TCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCTTCTAAA"+
	"CGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAATTAGGT"+
	"CTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTA"+
	"TAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAAC"+
	"TCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATC"+
	"AAAAAAATCGTAGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAAC"+
	"CACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCTCCGGGTC"+
	"CATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTC"+
	"ACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCA"+
	"AAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGC"+
	"TACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCTTCCCC"+
	"ACCCTTACTAACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCC"+
	"TATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTA"+
	"CCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACC"+
	"AACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCA"+
	"TCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCT"+
	"AACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCA"+
	"ACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAA"+
	"TCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAA"+
	"CTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGA"+
	"CCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATAC"+
	"TCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAACCC"+
	"CTGACCCCCATGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCC"+
	"CCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCG"+
	"ACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACC"+
	"CCATTACTAAACCCACACTCAACAGAAACAAAGCATACATCATTATTCTCGCACGGACTACAACCACGAC"+
	"CAATGATATGAAAAACCATCGTTGTATTTCAACTACAAGAACACCAATGACCCCAATACGCAAAACTAAC"+
	"CCCCTAATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAA"+
	"ACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCATGCACTA"+
	"CTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATC"+
	"ATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCC"+
	"TATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATAGC"+
	"AACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAAC"+
	"TTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA"+
	"GTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTGCCCTTCATTATTGCAGCCCTAGCAACACT"+
	"CCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATC"+
	"ACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACAT"+
	"TAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCC"+
	"TCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTA"+
	"GGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAAC"+
	"AACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCT"+
	"AACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATAC"+
	"TTCACAACAATCCTAATCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCCTGTC"+
	"CTTGTAGTATAAACTAATACACCAGTCTTGTAAACCGGAGATGAAAACCTTTTTCCAAGGACAAATCAGA"+
	"GAAAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTATTCTCTGTTCTTTC"+
	"ATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACA"+
	"TTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCA"+
	"ATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCA"+
	"ACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAG"+
	"TACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC"+
	"TCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCG"+
	"CTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTC"+
	"ATAAAGCCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATG";










  


        
        
                
                        RootsWeb is funded and supported by
                        Ancestry.com and our loyal RootsWeb community.
                        Learn more.
                        


                        About Us | Contact Us | Copyright | Report Inappropriate Material
                        

                        Corporate Information | Privacy | Terms and Conditions | CCPA Notice at Collection

Display Summary	Compute Distance	Create Fluxus.rdf File	Create MS Excel .csv File
Narrow Output Format	Include HVR2 and CR Data in Distance Calculation	Binary rdf format Multistate rdf format	Transpose CSV Matrix
Show SNP Frequency	Ignore Records Without HVR2 Data in Distance Calculation	Trim unique markers from .rdf file
Show Modal SNPs	Sort by Haplogroup	Collapse Insertions
Sort HVR by Frequency
Summarize Unique Mutations		Show Full HVR Names
Translate Long HVR Names
Mutations to ignore in calculations(separate with spaces)
Title for Summary Chart mtDNA Mutation Summary
Title for Genetic Distance Chart Genetic Distance Report

mtDNAtool: An mtDNA Analysis Utility

mtDNAtool

"+title+"

"+title+"